Pipeline Report

Created by Bpipe, Tue Oct 28 21:50:54 GMT 2014

Result


Succeeded

Timeline


run_spades
55 minutes, 15.346 s

Pipeline Stages


Total Runtime = 55 minutes, 15.477 seconds

  1. run_spades ✓

    Inputs
    • input/nanopore/Ecoli_both_2D.fastq
    Commandsspades.py --pe1-1 /mnt/miseqvm/141024_D00255_0105_AHAWGEADXX/Data/Intensities/BaseCalls/2035_S28_L001_R1_001.fastq.gz --pe1-2 /mnt/miseqvm/141024_D00255_0105_AHAWGEADXX/Data/Intensities/BaseCalls/2035_S28_L001_R2_001.fastq.gz --pacbio input/nanopore/Ecoli_both_2D.fastq -o /mnt/phatso/nick/poreathon/output/nickloman-spades
    Outputs
    • input/nanopore/Ecoli_both_2D.fastq
    Execution Time 2014-10-28 20:55:38 - 2014-10-28 21:50:53 (55 minutes, 15.346 seconds)