Alignments

Input	Analysis	Contributor	% Accuracy	# aligned	% aligned	Aln length	Analysis
LAST (v475) with -q1 (version 475)	Ecoli_R7_2D	nickloman	71.14	17056	84.91	6574	Coverage plot Length plot Pipeline report
BWA using Pacbio settings (version 0.7.10-r789)	Ecoli_R7_2D	nickloman	67.81	15418	76.76	6788	Coverage plot Length plot Pipeline report
LAST with -q2 (version 490)	Ecoli_R7_2D	nickloman	74.03	16401	81.65	5113	Coverage plot Length plot Pipeline report
LAST with -q1 (version 490)	Ecoli_R7_2D	nickloman	71.14	17056	84.91	6574	Coverage plot Length plot Pipeline report
BWA using -x ont2d settings (version bwa-0.7.10-r1017-dirty)	Ecoli_R7_2D	nickloman	71.48	16794	83.61	6482	Coverage plot Length plot Pipeline report
BWA using default settings (version 0.7.10-r789)	Ecoli_R7_2D	nickloman	84.00	9662	48.10	436	Coverage plot Length plot Pipeline report
LAST (v475) with -q1 (version 475)	Ecoli_R73_2D	nickloman	76.09	8914	75.40	6088	Coverage plot Length plot Pipeline report
BWA using Pacbio settings (version 0.7.10-r789)	Ecoli_R73_2D	nickloman	73.54	8425	71.26	6102	Coverage plot Length plot Pipeline report
LAST with -q2 (version 490)	Ecoli_R73_2D	nickloman	78.22	8748	73.99	5148	Coverage plot Length plot Pipeline report
LAST with -q1 (version 490)	Ecoli_R73_2D	nickloman	76.09	8914	75.40	6088	Coverage plot Length plot Pipeline report
BWA using -x ont2d settings (version bwa-0.7.10-r1017-dirty)	Ecoli_R73_2D	nickloman	76.46	8878	75.09	5990	Coverage plot Length plot Pipeline report
BWA using default settings (version 0.7.10-r789)	Ecoli_R73_2D	nickloman	82.92	7153	60.50	1451	Coverage plot Length plot Pipeline report
LAST (v475) with -q1 (version 475)	Ecoli_R73_2D_wf19	nickloman	82.27	8445	99.93	6208	Coverage plot Length plot Pipeline report
BWA using Pacbio settings (version 0.7.10-r789)	Ecoli_R73_2D_wf19	nickloman	79.51	8429	99.74	6240	Coverage plot Length plot Pipeline report
LAST with -q2 (version 490)	Ecoli_R73_2D_wf19	nickloman	83.23	8444	99.92	5592	Coverage plot Length plot Pipeline report
LAST with -q1 (version 490)	Ecoli_R73_2D_wf19	nickloman	82.27	8445	99.93	6208	Coverage plot Length plot Pipeline report
BWA using -x ont2d settings (version bwa-0.7.10-r1017-dirty)	Ecoli_R73_2D_wf19	nickloman	82.26	8444	99.92	6224	Coverage plot Length plot Pipeline report
BWA using default settings (version 0.7.10-r789)	Ecoli_R73_2D_wf19	nickloman	84.14	8369	99.03	3504	Coverage plot Length plot Pipeline report

Illumina-guided assembly

E. coli K-12

Analysis	NG50	bPipe result	QUAST result
nickloman-spades	4641769	bPipe report	QUAST report